NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335004_0380044

Scaffold Ga0335004_0380044


Overview

Basic Information
Taxon OID3300034021 Open in IMG/M
Scaffold IDGa0335004_0380044 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Oct2014-rr0057
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)807
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002267Metagenome / Metatranscriptome576Y

Sequences

Protein IDFamilyRBSSequence
Ga0335004_0380044_22_714F002267AGGAMTGVTALMTSYGGSSLPTLVYDLDAANYSAVPVNGTSDATGTYTLSVANAGSSISWQSANGGVFRKSNAVGTDFIYGGPNYVTGQSYTVFMAYKRIATADGRLLNTQSEASKDWLMGLYNGHDQTFYPNFAVNLPSSGADLFWHLDWATWNTSTGLGQLYSATSVSPSSVAFSATNAGGGGFDQLRLFSRSSGSEVQTADIGFIKVYNGVLTLANVQSLYTTYRTRFGYP
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